Given the nature of our interdisciplinary research we maintain a lab with critical mass both in computer science and molecular cell biology. We tend to host 10 – 12 trainees (postdocs, and graduate students) at any time. Trainees are supported by highly professional staff of 6 – 8 members and project managers, who offer unique expertise in bench and desk work and who ensure a longitudinal transfer of lab know-how between generations of trainees.
In such an environment, the graduate students and postdocs who excel are self-driven and willing to engage in rigorous peer-to-peer training. We also welcome applications from student and fellow candidates with explicit interests in dual-lab membership. At UTSW, we have longstanding collaborations with the Fiolka lab and Dean lab. More recently, we have started close interactions with the Rajaram lab. Other, applicant-initiated collaboration arrangements are possible as well.
While the lab is well-funded, the application for fellowships and other forms of independent funding is a mandatory part of the mentorship offered by Gaudenz Danuser, both at the graduate student and postdoctoral fellow levels. They are an invaluable element in building the trainees’ confidence in designing and effectively communicating research projects.
Like all labs in the Lyda Hill Department of Bioinformatics, we compensate postdocs per our highly competitive departmental pay plan. We honor excellence by providing significant bonus payments to postdocs with competitive fellowships. For example, according to the pay plan, K99/R00 awardees typically cross 100K/year salary level in their final postdoc years.
Where our trainees go...
Where our trainees go...
Name and Specialty
Andrew Weems
Molecular & Cell Biology
Xinxin Wang
Physics
First position after training
Assistant Professor, Biology
UT Austin
Assistant Professor, Physics
University of Oklahoma, Tulsa
Orlando Arguello-Miranda
Molecular Biology (K99 Fellow)
Assistant Professor, Plant and Microbial Biology
North Carolina State University, Raleigh
Eric Welf
Systems Biology (K25 Fellow)
Senior Research Associate, Systems Pharmacology
Regeneron, Westchester, New York
Phillippe Roudot
Computer Science (HSFP Fellow)
Assistant Professor, Turing Center for Living Systems
University of Marseille, France
Christoph Burckhardt
Cell Biology (Swiss National Science Foundation Fellow, Roche Research Foundation Fellow)
Senior Research Scientist
Lonza, Visp, Switzerland
Quiyang Shao
Biochemistry
Data Scientist, Wells Fargo
Xiao Ma
Mechanical Engineering
Assistant Professor, Bioengineering
New York University, New York
Maria Bagonis
Chemistry
Postdoctoral Researcher, Computer Science & Psychiatry
University of North Carolina, Chapel Hill
Postdocs
Kevin Dean
Chemistry (NIH F32 awardee)
Assistant Professor, Lyda Hill Department of Bioinformatics
UT Southwestern medical Center, Dallas
Assaf Zaritsky
Computer Science
Assistant Professor, Department of Software and Information Systems Engineering
Ben-Gurion University of the Negev, Be’er-Sheva, Israel
Zhengwen Zhang
Bioengineering
Master’s Program in Computer Science
Southern Methodist University, Dallas
Zhuo Gen
Bioengineering
Data Analyst
Censeo health, Dallas
Sangyoon Han
Mechanical Engineering
Assistant Professor, Biomedical Engineering
Michigan tech University, Houghton, Michigan
Claudia Schafer
Cell Biology
Research Associate,
MIT/Koch Institute for Cancer Research, Boston, Massachusetts
Liya Ding
Computer Science
Research Associate,
Allen Institute for Cell Science, Seattle, Washington
Marco Vilela
Applied Mathematics (NIH F32 awardee)
Research Faculty,
Brown University, Providence, Rhode Island
Deepak Chitajallu
Computer Science
Staff Scientist,
Kitware Inc. Chapel Hill, North Carolina
Francois Aguet
Computer Science (SNSF awardee)
Staff Scientist,
Broad Institute, Boston, Massachusetts
Alexis Lomakin
Cell Biology (Leukemia & Lymphoma Society Fellowship awardee)
Group Leader, King’s Prize Fellow
Kings College London, London, UK
Nancy Costigliola
Cell Biology
Second Postdoc with Tim Mitchison,
Harvard Medical School, Boston, Massachusetts
Kwonmoo Lee
Physics and Biochemistry (NIH F32 awardee)
Assistant Professor, Bioengineering
Worcester Polytechnical Institute, Massachusetts
Michelle Mendoza
Cell Biology (NIH K25 awardee, joint postdoc with John Blenis)
Assistant Professor, Cell Biology
UC San Francisco, California
Laura-Anne Lowery
Developmental Biology (NIH K99/R00 awardee, joint postdoc with Davie Van Vactor)
Assistant Professor, Cell Biology
Boston College, Massachusetts
Uli Schmid
Biophysics (DFG awardee)
Research Project Manager,
TWT Science and Innovation, Stuttgart, Germany
Sylvain Berlemont
Computer Science
Founder & CEO,
Keen Eye Technologies, Paris, France
Allen Liu
Biophysics (Leukemia and Lymphoma Society Fellowship, NIH K99/R00 awardee, joint postdoc with Sandra Schmid)
Assistant Professor, Mechanical Engineering
U. Michigan, Ann Arbor, Michigan
Achim Besser
Biophysics (DFG awardee)
Research Group Leader,
BASF Research, Ludwigshafen, Germany
Christian Dittrich
Chemistry (Novartis Research Foundation Fellowship)
Project Manager,
Merck Millipore, Schaffhausen, CH
Andrea Bacconi
Cell Biology (SNSF awardee)
Second postdoc with Velia Fowler
TSRI, La Jolla, California
Mohsen Sabouri
Physics
Staff Scientist,
TSRI, La Jolla, California
Michelle Mendoza
Cell Biology (NIH K25 awardee, joint postdoc with John Blenis)
Assistant Professor, Cell Biology
UC San Francisco, California
Khuloud Jaqaman
Physics (Helen Hay Whitney Foundation fellow)
Assistant Professor, Biophysics
UT Southwestern Medical Center, Dallas, Texas
Shann-Ching Chen
Computer Science
Staff Scientist,
Institute for Computational Health Sciences, UC San Francisco
Pascal Vallotton
Biophysics
Assistant Professor, Physics
University of Denver, Colorado
Dinah Loerke
Biophysics
Assistant Professor, Bioengineering
Carnegie Mellon University, Pittsburgh, Pennsylvania
Ge Yang
Applied Mathematics
Assistant Professor, Cell Biology
Einstein College of Medicine, New York City
Lin Ji
Applied Mathematics
Medical Engineering Group Lead,
Novartis AG, Basel, CH
Matthias Machacek
Mechanical Engineering (SNSF awardee, Novartis Research Foundation awardee)
Lab Head,
CSIRO, Sydney, Australia
Gabor Csucs
Biochemistry
Director,
Light Microscopy Center, ETH Zurich, Switzerland
Name and Specialty
First position after training
Xuexia Jiang
Mathematical Modeling for subcellular Signaling
Medical Student,
UT Southwestern Medical Center, Dallas, Texas
Ning Zhang
Computational and Systems Biology
Postdoctoral Fellow in Yuan Lao Lab,
Feinberg School of Medicine, Northwestern University, Chicago, Illinois
Jin Suk Park
Cancer Biology
Postdoctoral Fellow in Joan Massagué lab,
Sloan Kettering Institute, New York, New York
Ashwathi (Abbee) Mohan
Cancer Biology (NIH F30 awardee)
Medical student,
Washington University School of Medicine, St. Louis, Missouri
Youbean Oak
Molecular Biology
Simon-Kucher & Partners Consulting, Boston, Massachusetts
Pei-Hsin Hsu
Mathematics and Molecular Biology
Postdoctoral fellow in Angelika Amonrsquo lab,
HHMI/MIT, Boston, Massachusetts
Daniel Nunez
Bioengineering (NIH F31 awardee)
Postdoctoral Fellow,
U. Michigan, Ann Arbor, Michigan
Graduate Students
Hunter Elliott
Biophysics
Director, Image Data Analysis Core Facility
Harvard Medical School, Boston, Massachusetts
James Lin
Cell Biology
Founder and CTO, XCell Biosciences,
South San Francisco, California
Kathryn Applegate
Bioinformatics (NSF fellow)
Program Director,
BioLogos Forum
Alexandre Matov
Electrical Engineering
Postdoctoral Fellow in Torsten Wittmann lab,
UC San Francisco, California
Jonas Dorn
Biophysics (Roche Research Foundation awardee)
Postdoctoral Fellow in Paul Maddox’s lab,
IRIC, Montreal, Canada
Toru Fischbach
Biophysics
Synthes, Solothurn, Switzerland
Aaron Ponti
Biophysics
Staff Scientist,
Friedrich Miescher Institute, Basel, Switzerland
Claude Berney
Biophysics
Product Manager,
Johnson & Johnson Inc., Ostermundigen, Switzerland
Dominik Thomann
Biophysics
Research Engineer,
X-Rite, Regensdorf, Switzerland
Jaewon Huh
Statistics (HFSP Fellow)
Data Scientist, The Trade Desk
New York
David Saucier
Biomedical Engineering, (NIH F31 awardee)
Senior Technical Staff, Systems Research and Analysis
Sandia National Laboratories
Meghan Driscoll
Physics (NIH F32 and K99 awardee)
Assistant Professor, Pharmacology
University of Minnesota